pypet
What is
pypet
all about?
Main Features
Getting Started
Requirements
Install
What to do with
pypet
?
Basic Work Flow
Quick Working Example
Tutorial
Conceptualization of a Numerical Experiment
Naming Convention
#1 Pre-Processing
The Trajectory Container
#2 The Run Phase
#3 Post-Processing
Final Steps in the Main Script
#4 Analysis
Cookbook
Naming Convention
More on Trajectories
Interaction with Trajectories after an Experiment
Annotations
More on Parameters and Results
More about the Environment
Using BRIAN with pypet
Examples
Basic Concepts
Advanced Concepts
BRIAN Examples
FAQs and Known Issues
Library Reference
The Environment
The Trajectory and Group Nodes
Parameters and Results
Annotations
Utils
Exceptions
Global Constants
Logging
Storage Services
Brian Parameters, Results and Monitors
Brian Network Framework
Publication Information
Citation Policy
Brain Days and EuroPython Poster
Acknowledgments
Tests
Changelog
pypet
Docs
»
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
_
__class__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
__delattr__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
__dict__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
__format__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
__getattribute__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
__getitem__() (pypet.parameter.BaseParameter method)
__getstate__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.pypetlogging.HasLogger method)
__hash__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
__init__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
__module__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
__new__() (pypet.parameter.BaseParameter static method)
(pypet.parameter.BaseResult static method)
__reduce__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
__reduce_ex__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
__repr__ (pypet.parameter.BaseResult attribute)
__repr__() (pypet.parameter.BaseParameter method)
__setattr__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
__setstate__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.pypetlogging.HasLogger method)
__sizeof__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
__str__() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
__subclasshook__() (pypet.parameter.BaseParameter static method)
(pypet.parameter.BaseResult static method)
__weakref__ (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.pypetlogging.HasLogger attribute)
_equal_values() (pypet.parameter.BaseParameter method)
_execute_network_run() (pypet.brian.network.NetworkRunner method)
_expand() (pypet.parameter.BaseParameter method)
_explore() (pypet.parameter.BaseParameter method)
_extract_subruns() (pypet.brian.network.NetworkRunner method)
_load() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
_load_flags() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
_rename() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
_restore_default() (pypet.parameter.BaseParameter method)
_run_network() (pypet.brian.network.NetworkManager method)
_set_logger() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.pypetlogging.HasLogger method)
_set_parameter_access() (pypet.parameter.BaseParameter method)
_shrink() (pypet.parameter.BaseParameter method)
_store() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
_store_flags() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
_values_of_same_type() (pypet.parameter.BaseParameter method)
A
ACCESS_DATA (in module pypet.pypetconstants)
add_parameters() (pypet.brian.network.NetworkComponent method)
(pypet.brian.network.NetworkManager method)
ADD_ROW (pypet.storageservice.HDF5StorageService attribute)
add_to_network() (pypet.brian.network.NetworkComponent method)
analyse() (pypet.brian.network.NetworkAnalyser method)
ANNOTATED (pypet.storageservice.HDF5StorageService attribute)
ANNOTATION_PREFIX (pypet.storageservice.HDF5StorageService attribute)
Annotations (class in pypet.annotations)
ARRAY (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
ARRAY_MODE (pypet.brian.parameter.BrianMonitorResult attribute)
ArrayParameter (class in pypet.parameter)
ATTR_LIST (pypet.storageservice.HDF5StorageService attribute)
B
BACKUP (in module pypet.pypetconstants)
BaseParameter (class in pypet.parameter)
BaseResult (class in pypet.parameter)
BrianDurationParameter (class in pypet.brian.parameter)
BrianMonitorResult (class in pypet.brian.parameter)
BrianParameter (class in pypet.brian.parameter)
BrianResult (class in pypet.brian.parameter)
build() (pypet.brian.network.NetworkComponent method)
(pypet.brian.network.NetworkManager method)
C
CARRAY (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
cartesian_product() (in module pypet.utils.explore)
CLASS_NAME (pypet.storageservice.HDF5StorageService attribute)
CLOSE_FILE (in module pypet.pypetconstants)
COLL_DICT (pypet.storageservice.HDF5StorageService attribute)
COLL_LIST (pypet.storageservice.HDF5StorageService attribute)
COLL_MATRIX (pypet.storageservice.HDF5StorageService attribute)
COLL_NDARRAY (pypet.storageservice.HDF5StorageService attribute)
COLL_SCALAR (pypet.storageservice.HDF5StorageService attribute)
COLL_TUPLE (pypet.storageservice.HDF5StorageService attribute)
COLL_TYPE (pypet.storageservice.HDF5StorageService attribute)
COMMENT (pypet.storageservice.HDF5StorageService attribute)
compact_hdf5_file() (in module pypet)
complevel (pypet.storageservice.HDF5StorageService attribute)
complib (pypet.storageservice.HDF5StorageService attribute)
ConfigGroup (class in pypet.naturalnaming)
D
DATA_PREFIX (pypet.storageservice.HDF5StorageService attribute)
DataNotInStorageError
DATATYPE_TABLE (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
DELETE (in module pypet.pypetconstants)
DELETE_LINK (in module pypet.pypetconstants)
DerivedParameterGroup (class in pypet.naturalnaming)
DIA_NAME_LIST (pypet.parameter.SparseParameter attribute)
DICT (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
display_time (pypet.storageservice.HDF5StorageService attribute)
E
EARRAY (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
encoding (pypet.storageservice.HDF5StorageService attribute)
Environment (class in pypet.environment)
execute_network_pre_run() (pypet.brian.network.NetworkRunner method)
execute_network_run() (pypet.brian.network.NetworkRunner method)
F
f_aconf() (pypet.naturalnaming.ConfigGroup method)
f_add_config() (pypet.naturalnaming.ConfigGroup method)
(pypet.trajectory.Trajectory method)
f_add_config_group() (pypet.naturalnaming.ConfigGroup method)
(pypet.trajectory.Trajectory method)
f_add_derived_parameter() (pypet.naturalnaming.DerivedParameterGroup method)
f_add_derived_parameter_group() (pypet.naturalnaming.DerivedParameterGroup method)
f_add_group() (pypet.naturalnaming.NNGroupNode method)
f_add_leaf() (pypet.naturalnaming.NNGroupNode method)
f_add_link() (pypet.naturalnaming.NNGroupNode method)
f_add_parameter() (pypet.naturalnaming.ParameterGroup method)
(pypet.trajectory.Trajectory method)
f_add_parameter_group() (pypet.naturalnaming.ParameterGroup method)
(pypet.trajectory.Trajectory method)
f_add_postprocessing() (pypet.environment.Environment method)
f_add_result() (pypet.naturalnaming.ResultGroup method)
f_add_result_group() (pypet.naturalnaming.ResultGroup method)
f_add_to_dynamic_imports() (pypet.trajectory.Trajectory method)
f_adpar() (pypet.naturalnaming.DerivedParameterGroup method)
f_ann_to_str() (pypet.annotations.Annotations method)
(pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_ann_to_string() (pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_apar() (pypet.naturalnaming.ParameterGroup method)
f_ares() (pypet.naturalnaming.ResultGroup method)
f_backup() (pypet.trajectory.Trajectory method)
f_children() (pypet.naturalnaming.NNGroupNode method)
f_contains() (pypet.naturalnaming.NNGroupNode method)
f_continue() (pypet.environment.Environment method)
f_debug() (pypet.naturalnaming.NNGroupNode method)
f_delete_item() (pypet.trajectory.Trajectory method)
f_delete_items() (pypet.trajectory.Trajectory method)
f_delete_link() (pypet.trajectory.Trajectory method)
f_delete_links() (pypet.trajectory.Trajectory method)
f_disable_logging() (pypet.environment.Environment method)
f_empty() (pypet.annotations.Annotations method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_expand() (pypet.trajectory.Trajectory method)
f_explore() (pypet.trajectory.Trajectory method)
f_finalize() (pypet.environment.MultiprocContext method)
f_find_idx() (pypet.trajectory.Trajectory method)
f_get() (pypet.annotations.Annotations method)
(pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_get_all() (pypet.naturalnaming.NNGroupNode method)
f_get_annotations() (pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_get_array() (pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_get_children() (pypet.naturalnaming.NNGroupNode method)
f_get_class_name() (pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_get_config() (pypet.trajectory.Trajectory method)
f_get_default() (pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_get_derived_parameters() (pypet.trajectory.Trajectory method)
f_get_explored_parameters() (pypet.trajectory.Trajectory method)
f_get_from_runs() (pypet.trajectory.Trajectory method)
f_get_groups() (pypet.naturalnaming.NNGroupNode method)
f_get_leaves() (pypet.naturalnaming.NNGroupNode method)
f_get_links() (pypet.naturalnaming.NNGroupNode method)
f_get_parameters() (pypet.trajectory.Trajectory method)
f_get_range() (pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_get_range_length() (pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_get_results() (pypet.trajectory.Trajectory method)
f_get_root() (pypet.naturalnaming.NNGroupNode method)
f_get_run_information() (pypet.trajectory.Trajectory method)
f_get_run_names() (pypet.trajectory.Trajectory method)
f_groups() (pypet.naturalnaming.NNGroupNode method)
f_has_children() (pypet.naturalnaming.NNGroupNode method)
f_has_groups() (pypet.naturalnaming.NNGroupNode method)
f_has_leaves() (pypet.naturalnaming.NNGroupNode method)
f_has_links() (pypet.naturalnaming.NNGroupNode method)
f_has_range() (pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_idx_to_run() (pypet.trajectory.Trajectory method)
f_is_array() (pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_is_completed() (pypet.trajectory.Trajectory method)
f_is_empty() (pypet.annotations.Annotations method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
(pypet.trajectory.Trajectory method)
f_is_root() (pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_iter_leaves() (pypet.naturalnaming.NNGroupNode method)
f_iter_nodes() (pypet.naturalnaming.NNGroupNode method)
f_iter_runs() (pypet.trajectory.Trajectory method)
f_leaves() (pypet.naturalnaming.NNGroupNode method)
f_links() (pypet.naturalnaming.NNGroupNode method)
f_load() (pypet.naturalnaming.NNGroupNode method)
(pypet.trajectory.Trajectory method)
f_load_child() (pypet.naturalnaming.NNGroupNode method)
f_load_item() (pypet.trajectory.Trajectory method)
f_load_items() (pypet.trajectory.Trajectory method)
f_load_skeleton() (pypet.trajectory.Trajectory method)
f_lock() (pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_lock_derived_parameters() (pypet.trajectory.Trajectory method)
f_lock_parameters() (pypet.trajectory.Trajectory method)
f_merge() (pypet.trajectory.Trajectory method)
f_migrate() (pypet.trajectory.Trajectory method)
f_pipeline() (pypet.environment.Environment method)
f_preset_config() (pypet.trajectory.Trajectory method)
f_preset_parameter() (pypet.trajectory.Trajectory method)
f_remove() (pypet.naturalnaming.NNGroupNode method)
(pypet.trajectory.Trajectory method)
f_remove_child() (pypet.naturalnaming.NNGroupNode method)
f_remove_item() (pypet.trajectory.Trajectory method)
f_remove_items() (pypet.trajectory.Trajectory method)
f_remove_link() (pypet.naturalnaming.NNGroupNode method)
f_restore_default() (pypet.trajectory.Trajectory method)
f_run() (pypet.environment.Environment method)
f_set() (pypet.annotations.Annotations method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_set_annotations() (pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_set_crun() (pypet.trajectory.Trajectory method)
f_set_large_overview() (pypet.environment.Environment method)
f_set_properties() (pypet.trajectory.Trajectory method)
f_set_single() (pypet.annotations.Annotations method)
(pypet.brian.parameter.BrianMonitorResult method)
(pypet.brian.parameter.BrianResult method)
(pypet.parameter.PickleResult method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_set_small_overview() (pypet.environment.Environment method)
f_set_summary() (pypet.environment.Environment method)
f_shrink() (pypet.trajectory.Trajectory method)
f_store() (pypet.naturalnaming.NNGroupNode method)
(pypet.trajectory.Trajectory method)
f_store_child() (pypet.naturalnaming.NNGroupNode method)
f_store_item() (pypet.trajectory.Trajectory method)
f_store_items() (pypet.trajectory.Trajectory method)
f_supports() (pypet.brian.parameter.BrianParameter method)
(pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
(pypet.parameter.PickleParameter method)
(pypet.parameter.SparseParameter method)
f_supports_fast_access() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
f_switch_off_all_overview() (pypet.environment.Environment method)
f_switch_off_large_overview() (pypet.environment.Environment method)
f_switch_off_small_overview() (pypet.environment.Environment method)
f_to_dict() (pypet.annotations.Annotations method)
(pypet.naturalnaming.NNGroupNode method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
(pypet.trajectory.Trajectory method)
f_unlock() (pypet.parameter.BaseParameter method)
(pypet.parameter.Parameter method)
f_val_to_str() (pypet.parameter.BaseParameter method)
(pypet.parameter.BaseResult method)
(pypet.parameter.Parameter method)
(pypet.parameter.Result method)
(pypet.parameter.SparseResult method)
filename (pypet.storageservice.HDF5StorageService attribute)
find_unique_points() (in module pypet.utils.explore)
fletcher32 (pypet.storageservice.HDF5StorageService attribute)
FLOAT_MODE (pypet.brian.parameter.BrianParameter attribute)
(pypet.brian.parameter.BrianResult attribute)
FLUSH (in module pypet.pypetconstants)
FORMAT_ZEROS (in module pypet.pypetconstants)
FORMATTED_COLUMN_PREFIX (pypet.storageservice.HDF5StorageService attribute)
FORMATTED_RUN_NAME (in module pypet.pypetconstants)
FRAME (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
G
GROUP (in module pypet.pypetconstants)
H
HasLogger (class in pypet.pypetlogging)
HDF5_MAX_OBJECT_TABLE_TYPE_ATTRS (in module pypet.pypetconstants)
HDF5_STRCOL_MAX_ARRAY_LENGTH (in module pypet.pypetconstants)
HDF5_STRCOL_MAX_COMMENT_LENGTH (in module pypet.pypetconstants)
HDF5_STRCOL_MAX_LOCATION_LENGTH (in module pypet.pypetconstants)
HDF5_STRCOL_MAX_NAME_LENGTH (in module pypet.pypetconstants)
HDF5_STRCOL_MAX_RUNTIME_LENGTH (in module pypet.pypetconstants)
HDF5_STRCOL_MAX_VALUE_LENGTH (in module pypet.pypetconstants)
HDF5StorageService (class in pypet.storageservice)
I
IDENTIFIER (pypet.brian.parameter.BrianParameter attribute)
(pypet.brian.parameter.BrianResult attribute)
(pypet.parameter.ArrayParameter attribute)
(pypet.parameter.SparseParameter attribute)
(pypet.parameter.SparseResult attribute)
INIT_PREFIX (pypet.storageservice.HDF5StorageService attribute)
is_open (pypet.storageservice.HDF5StorageService attribute)
(pypet.storageservice.LockWrapper attribute)
item (pypet.storageservice.HDF5StorageService attribute)
L
LazyStorageService (class in pypet.storageservice)
LEAF (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
LENGTH (pypet.storageservice.HDF5StorageService attribute)
LIST (in module pypet.pypetconstants)
load() (pypet.storageservice.HDF5StorageService method)
(pypet.storageservice.LazyStorageService method)
(pypet.storageservice.LockWrapper method)
LOAD_DATA (in module pypet.pypetconstants)
LOAD_NOTHING (in module pypet.pypetconstants)
LOAD_SKELETON (in module pypet.pypetconstants)
load_trajectory() (in module pypet.trajectory)
lock (pypet.storageservice.LockWrapper attribute)
LockWrapper (class in pypet.storageservice)
M
MERGE (in module pypet.pypetconstants)
MODIFY_ROW (pypet.storageservice.HDF5StorageService attribute)
multiproc_safe (pypet.storageservice.LockWrapper attribute)
MultiprocContext (class in pypet.environment)
N
NAME_TABLE_MAPPING (pypet.storageservice.HDF5StorageService attribute)
nested_equal() (in module pypet.utils.comparisons)
NetworkAnalyser (class in pypet.brian.network)
NetworkComponent (class in pypet.brian.network)
NetworkManager (class in pypet.brian.network)
NetworkRunner (class in pypet.brian.network)
NNGroupNode (class in pypet.naturalnaming)
NoSuchServiceError
NotUniqueNodeError
O
ObjectTable (class in pypet.parameter)
OPEN_FILE (in module pypet.pypetconstants)
OTHER_NAME_LIST (pypet.parameter.SparseParameter attribute)
OVERWRITE_DATA (in module pypet.pypetconstants)
P
pandas_append (pypet.storageservice.HDF5StorageService attribute)
pandas_format (pypet.storageservice.HDF5StorageService attribute)
PANEL (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
Parameter (class in pypet.parameter)
PARAMETER_SUPPORTED_DATA (in module pypet.pypetconstants)
ParameterGroup (class in pypet.naturalnaming)
ParameterLockedException
parameters_equal() (in module pypet.utils.comparisons)
PARAMETERTYPEDICT (in module pypet.pypetconstants)
PickleParameter (class in pypet.parameter)
PickleResult (class in pypet.parameter)
PR_ATTR_NAME_MAPPING (pypet.storageservice.HDF5StorageService attribute)
pre_build() (pypet.brian.network.NetworkComponent method)
(pypet.brian.network.NetworkManager method)
pre_run_network() (pypet.brian.network.NetworkManager method)
PREPARE_MERGE (in module pypet.pypetconstants)
PresettingError
progressbar() (in module pypet)
pypet.brian.network (module)
pypet.brian.parameter (module)
pypet.environment (module)
pypet.parameter (module)
pypet.pypetconstants (module)
pypet.pypetexceptions (module)
pypet.utils.comparisons (module)
pypet.utils.explore (module)
Q
queue (pypet.storageservice.QueueStorageServiceSender attribute)
QueueStorageServiceSender (class in pypet.storageservice)
QueueStorageServiceWriter (class in pypet.storageservice)
R
remove_from_network() (pypet.brian.network.NetworkComponent method)
REMOVE_ROW (pypet.storageservice.HDF5StorageService attribute)
Result (class in pypet.parameter)
ResultGroup (class in pypet.naturalnaming)
results_equal() (in module pypet.utils.comparisons)
run() (pypet.storageservice.QueueStorageServiceWriter method)
RUN_NAME (in module pypet.pypetconstants)
RUN_NAME_DUMMY (in module pypet.pypetconstants)
run_network() (in module pypet.brian.network)
(pypet.brian.network.NetworkManager method)
S
SCALAR_TYPE (pypet.storageservice.HDF5StorageService attribute)
send_done() (pypet.storageservice.QueueStorageServiceSender method)
SERIES (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
SHARED_DATA (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
shuffle (pypet.storageservice.HDF5StorageService attribute)
SINGLE_RUN (in module pypet.pypetconstants)
SparseParameter (class in pypet.parameter)
SparseResult (class in pypet.parameter)
SPLIT_TABLE (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
STORAGE_TYPE (pypet.storageservice.HDF5StorageService attribute)
store() (pypet.storageservice.HDF5StorageService method)
(pypet.storageservice.LazyStorageService method)
(pypet.storageservice.LockWrapper method)
(pypet.storageservice.QueueStorageServiceSender method)
STORE_DATA (in module pypet.pypetconstants)
STORE_DATA_SKIPPING (in module pypet.pypetconstants)
STORE_NOTHING (in module pypet.pypetconstants)
STRING_MODE (pypet.brian.parameter.BrianParameter attribute)
(pypet.brian.parameter.BrianResult attribute)
T
TABLE (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
TABLE_MODE (pypet.brian.parameter.BrianMonitorResult attribute)
TooManyGroupsError
Trajectory (class in pypet.trajectory)
TRAJECTORY (in module pypet.pypetconstants)
TREE (in module pypet.pypetconstants)
TYPE_FLAG_MAPPING (pypet.storageservice.HDF5StorageService attribute)
U
UPDATE_DATA (in module pypet.pypetconstants)
UPDATE_SKELETON (in module pypet.pypetconstants)
V
v_annotations (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_auto_load (pypet.trajectory.Trajectory attribute)
v_branch (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_comment (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
(pypet.trajectory.Trajectory attribute)
v_crun (pypet.trajectory.Trajectory attribute)
v_depth (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_environment_hexsha (pypet.trajectory.Trajectory attribute)
v_environment_name (pypet.trajectory.Trajectory attribute)
v_explored (pypet.parameter.BaseParameter attribute)
(pypet.parameter.Parameter attribute)
v_fast_access (pypet.trajectory.Trajectory attribute)
v_fast_accessible (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_filename (pypet.trajectory.Trajectory attribute)
v_full_copy (pypet.parameter.BaseParameter attribute)
(pypet.parameter.Parameter attribute)
(pypet.trajectory.Trajectory attribute)
v_full_name (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_hexsha (pypet.environment.Environment attribute)
v_idx (pypet.trajectory.Trajectory attribute)
v_is_group (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_is_leaf (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_is_parameter (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_is_root (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_is_run (pypet.trajectory.Trajectory attribute)
v_iter_recursive (pypet.trajectory.Trajectory attribute)
v_leaf (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_location (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_locked (pypet.parameter.BaseParameter attribute)
(pypet.parameter.Parameter attribute)
v_log_path (pypet.environment.Environment attribute)
v_max_depth (pypet.trajectory.Trajectory attribute)
v_monitor_type (pypet.brian.parameter.BrianMonitorResult attribute)
v_name (pypet.environment.Environment attribute)
(pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_no_data_string (pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_parameter (pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_protocol (pypet.parameter.PickleParameter attribute)
(pypet.parameter.PickleResult attribute)
v_python (pypet.trajectory.Trajectory attribute)
v_root (pypet.naturalnaming.NNGroupNode attribute)
v_run_branch (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_shortcuts (pypet.trajectory.Trajectory attribute)
v_standard_leaf (pypet.trajectory.Trajectory attribute)
v_standard_parameter (pypet.trajectory.Trajectory attribute)
v_standard_result (pypet.trajectory.Trajectory attribute)
v_storage_mode (pypet.brian.parameter.BrianMonitorResult attribute)
(pypet.brian.parameter.BrianParameter attribute)
(pypet.brian.parameter.BrianResult attribute)
v_storage_service (pypet.trajectory.Trajectory attribute)
v_stored (pypet.naturalnaming.NNGroupNode attribute)
(pypet.parameter.BaseParameter attribute)
(pypet.parameter.BaseResult attribute)
(pypet.parameter.Parameter attribute)
(pypet.parameter.Result attribute)
(pypet.parameter.SparseResult attribute)
v_time (pypet.environment.Environment attribute)
(pypet.trajectory.Trajectory attribute)
v_timestamp (pypet.environment.Environment attribute)
(pypet.trajectory.Trajectory attribute)
v_traj (pypet.environment.Environment attribute)
v_trajectory (pypet.environment.Environment attribute)
v_trajectory_name (pypet.trajectory.Trajectory attribute)
v_trajectory_time (pypet.trajectory.Trajectory attribute)
v_trajectory_timestamp (pypet.trajectory.Trajectory attribute)
v_version (pypet.trajectory.Trajectory attribute)
v_with_links (pypet.trajectory.Trajectory attribute)
VersionMismatchError
VLARRAY (in module pypet.pypetconstants)
(pypet.storageservice.HDF5StorageService attribute)
W
WRAP_MODE_LOCK (in module pypet.pypetconstants)
WRAP_MODE_NONE (in module pypet.pypetconstants)
WRAP_MODE_QUEUE (in module pypet.pypetconstants)
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